HTLV-1 p12I protein sequences from South America: truncated proteins and common genetic signatures

AIDS Res Hum Retroviruses. 2006 May;22(5):466-9. doi: 10.1089/aid.2006.22.466.

Abstract

p12 pX ORF-I (p12I) of simian T cell lymphotropic virus 1 from Central and West Africa is a 91-amino acid (aa) protein, contrasting with the known p12 sequences from human T cell lymphotropic virus type 1, which are 99 aa in length. An in silico sequence analysis shows a premature termination codon in HTLV-1 p12I sequences from South American and Japanese strains. A translation analysis indicated the presence of 86-aa and 81-aa p12I proteins, shorter than the 99-aa protein found in the majority of HTLV-1 strains around the world. This report shows one more common feature between these two viruses. Additionally, the HTLV-1 p12 signature reported as a genetic marker of Brazilian sequences (p12I P63 and P91) is also highly prevalent in p12 Argentinean sequences. Because p12I may confer a proliferative advantage on HTLV-1-infected cells the existence of naturally truncated proteins might supply insights into its pathogenic mechanisms.

Publication types

  • Comparative Study
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Codon, Terminator
  • Computer Simulation
  • Genetic Markers
  • Human T-lymphotropic virus 1 / genetics*
  • Humans
  • Molecular Sequence Data
  • Oncogene Proteins, Viral / chemistry*
  • Oncogene Proteins, Viral / genetics
  • Protein Structure, Tertiary
  • Sequence Homology, Amino Acid
  • South America

Substances

  • Codon, Terminator
  • Genetic Markers
  • Oncogene Proteins, Viral