A normalised scale for structural genomics target ranking: the OB-Score

FEBS Lett. 2006 Jul 10;580(16):4005-9. doi: 10.1016/j.febslet.2006.06.015. Epub 2006 Jun 16.

Abstract

Target selection and ranking is fundamental to structural genomics. We present a Z-score scale, the "OB-Score", to rank potential targets by their predicted propensity to produce diffraction-quality crystals. The OB-Score is derived from a matrix of predicted isoelectric point and hydrophobicity values for nonredundant PDB entries solved to <or=3.0 A against a background of UniRef50. A highly significant difference was found between the OB-Scores for TargetDB test datasets. A wide range of OB-Scores was observed across 241 proteomes and within 7868 PfamA families; 73.4% of PfamA families contain >or=1 member with a high OB-Score, presenting favourable candidates for structural studies.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Databases, Protein
  • Genomics / methods*
  • Hydrophobic and Hydrophilic Interactions
  • Isoelectric Point
  • Proteins / chemistry*
  • Proteins / genetics
  • Statistics as Topic

Substances

  • Proteins