Structure and dynamics of membrane-associated ICP47, a viral inhibitor of the MHC I antigen-processing machinery

J Biol Chem. 2006 Oct 13;281(41):30365-72. doi: 10.1074/jbc.M603000200. Epub 2006 Jul 11.

Abstract

To evade the host's immune response, herpes simplex virus employs the immediate early gene product ICP47 (IE12) to suppress antigen presentation to cytotoxic T-lymphocytes by inhibition of the ATP-binding cassette transporter associated with antigen processing (TAP). ICP47 is a membrane-associated protein adopting an alpha-helical conformation. Its active domain was mapped to residues 3-34 and shown to encode all functional properties of the full-length protein. The active domain of ICP47 was reconstituted into oriented phospholipid bilayers and studied by proton-decoupled 15N and 2H solid-state NMR spectroscopy. In phospholipid bilayers, the protein adopts a helix-loop-helix structure, where the average tilt angle of the helices relative to the membrane surface is approximately 15 degrees (+/- 7 degrees ). The alignment of both structured domains exhibits a mosaic spread of approximately 10 degrees . A flexible dynamic loop encompassing residues 17 and 18 separates the two helices. Refinement of the experimental data indicates that helix 1 inserts more deeply into the membrane. These novel insights into the structure of ICP47 represent an important step toward a molecular understanding of the immune evasion mechanism of herpes simplex virus and are instrumental for the design of new therapeutics.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Cell Membrane / metabolism
  • Dimerization
  • Humans
  • Immediate-Early Proteins / chemistry*
  • Lipid Bilayers / chemistry
  • Magnetic Resonance Spectroscopy
  • Major Histocompatibility Complex
  • Models, Molecular
  • Protein Conformation
  • Protein Structure, Secondary
  • Protons
  • Simplexvirus / metabolism
  • T-Lymphocytes, Cytotoxic / virology
  • Temperature
  • Viral Proteins / chemistry*

Substances

  • ICP47 protein, Herpes simplex virus
  • Immediate-Early Proteins
  • Lipid Bilayers
  • Protons
  • Viral Proteins