A new colorimetric assay for methionyl aminopeptidases: examination of the binding of a new class of pseudopeptide analog inhibitors

Anal Biochem. 2006 Oct 1;357(1):43-9. doi: 10.1016/j.ab.2006.06.012. Epub 2006 Jun 28.

Abstract

A direct and convenient spectrophotometric assay has been developed for methionine aminopeptidases (MetAPs). The method employs the hydrolysis of a substrate that is a methionyl analogue of p-nitroaniline (L-Met-p-NA), which releases the chromogenic product p-nitroaniline. This chromogenic product can be monitored continuously using a UV-Vis spectrophotometer set at 405 nm. The assay was tested with the type I MetAP from Escherichia coli (EcMetAP-I) and the type II MetAP from Pyrococcus furiosus (PfMetAP-II). Using L-Met-p-NA, the kinetic constants k(cat) and K(m) were determined for EcMetAP-I and PfMetAP-II and were compared with those obtained with a "standard" high-performance liquid chromatography (HPLC) discontinuous assay. The assay has also been used to determine the temperature dependence of the kinetic constant k(cat) for PfMetAP-II as well as to screen two novel pseudopeptide inhibitors of MetAPs. The results demonstrate that L-Met-p-NA provides a fast, convenient, and effective substrate for both type I and type II MetAPs and that this substrate can be used to quickly screen inhibitors of MetAPs.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Aminopeptidases / analysis*
  • Aminopeptidases / antagonists & inhibitors*
  • Colorimetry / methods*
  • Enzyme Inhibitors / classification*
  • Enzyme Inhibitors / metabolism*
  • Escherichia coli / enzymology*
  • Hydrolysis
  • Kinetics
  • Methionine / analogs & derivatives
  • Methionine / metabolism
  • Methionyl Aminopeptidases
  • Peptides / metabolism
  • Pyrococcus furiosus / enzymology*
  • Substrate Specificity
  • Thermodynamics
  • Time Factors

Substances

  • Enzyme Inhibitors
  • Peptides
  • methionine 4-nitroanilide
  • Methionine
  • Aminopeptidases
  • Methionyl Aminopeptidases