Sequencing and comparative analysis of a pig bovine viral diarrhea virus genome

Virus Res. 2006 Dec;122(1-2):164-70. doi: 10.1016/j.virusres.2006.05.005. Epub 2006 Jul 18.

Abstract

In present study, we report the first complete genomic sequence of pig bovine viral diarrhea (BVD) virus, that of strain ZM-95, which is 12,220 nucleotides long and contains short 5' and 3' non-coding regions and one open reading frame encoding a large polyprotein with 28 potential N-glycosylation sites (Asn-X-Ser or Asn-X-Thr). Within the non-structural protein encoding region, no foreign nucleotide insertions was found as those usually observed for cytopathogenic BVDV-1, but close to the 3'-terminal of the capsid protein (1119-1124bp) it contains a short insertion of a six nucleotide sequence (CTCACA). Three hypervariable regions were identified in the polyprotein-encoding region, with one of them comprising a sequence motif encoding a unique five amino acid peptide HYKKK in glycoprotein E2 gene. The genomic comparison and phylogenetic analyses showed that ZM-95 should be classified into BVDV-1, but was genetically divergent from other pestiviruses sequenced to date since its highest genetic similarity was only 76.6% (with SD-1), therefore, placed as a novel subgroup of BVDV-1.

Publication types

  • Comparative Study
  • Research Support, Non-U.S. Gov't

MeSH terms

  • 3' Untranslated Regions / genetics
  • 5' Untranslated Regions / genetics
  • Capsid Proteins / genetics
  • Diarrhea Viruses, Bovine Viral / classification
  • Diarrhea Viruses, Bovine Viral / genetics*
  • Diarrhea Viruses, Bovine Viral / isolation & purification
  • Genome, Viral*
  • Glycosylation
  • Molecular Sequence Data
  • Open Reading Frames
  • Polyproteins / genetics
  • Recombination, Genetic
  • Sequence Analysis, DNA
  • Sequence Homology
  • Viral Envelope Proteins / genetics
  • Viral Nonstructural Proteins / genetics
  • Viral Proteins / genetics

Substances

  • 3' Untranslated Regions
  • 5' Untranslated Regions
  • Capsid Proteins
  • Polyproteins
  • Viral Envelope Proteins
  • Viral Nonstructural Proteins
  • Viral Proteins
  • gp53, bovine viral diarrhea virus

Associated data

  • GENBANK/AF526381