DNA unwinding by Escherichia coli DNA helicase I (TraI) provides evidence for a processive monomeric molecular motor

J Biol Chem. 2006 Nov 24;281(47):36110-6. doi: 10.1074/jbc.M604412200. Epub 2006 Sep 19.

Abstract

The F plasmid TraI protein (DNA helicase I) plays an essential role in conjugative DNA transfer as both a transesterase and a helicase. Previous work has shown that the 192-kDa TraI protein is a highly processive helicase, catalytically separating >850 bp under steady-state conditions. In this report, we examine the kinetic mechanism describing DNA unwinding of TraI. The kinetic step size of TraI was measured under both single turnover and pre-steady-state conditions. The resulting kinetic step-size estimate was approximately 6-8 bp step(-1). TraI can separate double-stranded DNA at a rate of approximately 1100 bp s(-1), similar to the measured unwinding rate of the RecBCD helicase, and appears to dissociate very slowly from the 3' terminus following translocation and strand-separation events. Analyses of pre-steady-state burst amplitudes indicate that TraI can function as a monomer, similar to the bacteriophage T4 helicase, Dda. However, unlike Dda, TraI is a highly processive monomeric helicase, making it unique among the DNA helicases characterized thus far.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adenosine Triphosphate / chemistry
  • Base Pairing
  • Catalysis
  • DNA / chemistry*
  • DNA Helicases / physiology*
  • DNA, Single-Stranded / chemistry
  • Escherichia coli / enzymology*
  • Escherichia coli Proteins / chemistry
  • Escherichia coli Proteins / physiology*
  • Exodeoxyribonuclease V / chemistry
  • Kinetics
  • Models, Genetic
  • Models, Statistical
  • Nucleic Acid Conformation*
  • Nucleic Acid Denaturation*
  • Time Factors

Substances

  • DNA, Single-Stranded
  • Escherichia coli Proteins
  • Adenosine Triphosphate
  • DNA
  • Exodeoxyribonuclease V
  • exodeoxyribonuclease V, E coli
  • TraI protein, E coli
  • DNA Helicases