High-throughput bioluminescence screening of ubiquitin-proteasome pathway inhibitors from chemical and natural sources

J Biomol Screen. 2007 Feb;12(1):106-16. doi: 10.1177/1087057106296494. Epub 2006 Dec 14.

Abstract

To discover original inhibitors of the ubiquitin-proteasome pathway, the authors have developed a cell-based bioluminescent assay and used it to screen collections of plant extracts and chemical compounds. They first established a DLD-1 human colon cancer cell line that stably expresses a 4Ubiquitin-Luciferase (4Ub-Luc) reporter protein, efficiently targeted to the ubiquitin-proteasome degradation pathway. The assay was then adapted to 96- and 384-well plate formats and calibrated with reference proteasome inhibitors. Assay robustness was carefully assessed, particularly cell toxicity, and the statistical Z factor value was calculated to 0.83, demonstrating a good performance level of the assay. A total of 18,239 molecules and 15,744 plant extracts and fractions thereof were screened for their capacity to increase the luciferase activity in DLD-1 4Ub-Luc cells, and 21 molecules and 66 extracts inhibiting the ubiquitin-proteasome pathway were identified. The fractionation of an active methanol extract of Physalis angulata L. aerial parts was performed to isolate 2 secosteroids known as physalin B and C. In a cell-based Western blot assay, the ubiquitinated protein accumulation was confirmed after a physalin treatment confirming the accuracy of the screening process. The method reported here thus provides a robust approach to identify novel ubiquitin-proteasome pathway inhibitors in large collections of chemical compounds and natural products.

MeSH terms

  • Cell Count
  • Cell Line, Tumor
  • Cell Survival / drug effects
  • Chemical Fractionation
  • Drug-Related Side Effects and Adverse Reactions
  • Enzyme Inhibitors / analysis*
  • Enzyme Inhibitors / chemistry
  • Enzyme Inhibitors / pharmacology*
  • Humans
  • Lactones / chemistry
  • Lactones / pharmacology
  • Luciferases / antagonists & inhibitors
  • Luciferases / metabolism*
  • Neoplasm Proteins / metabolism
  • Oligopeptides / pharmacology
  • Plant Extracts / analysis*
  • Plant Extracts / chemistry
  • Plant Extracts / pharmacology*
  • Proteasome Inhibitors*
  • Reproducibility of Results
  • Secosteroids
  • Steroids / chemistry
  • Steroids / pharmacology
  • Substrate Specificity / drug effects
  • Time Factors
  • Transfection
  • Ubiquitin / antagonists & inhibitors*

Substances

  • Enzyme Inhibitors
  • Lactones
  • Neoplasm Proteins
  • Oligopeptides
  • Plant Extracts
  • Proteasome Inhibitors
  • Secosteroids
  • Steroids
  • Ubiquitin
  • physalin B
  • Luciferases
  • epoxomicin