The multilayer films of branched polyethyleneimine (BPEI) and poly(acrylic acid) (PAA) have been fabricated with the layer-by-layer (LbL) method. Two characteristic courses of the film thickness growth are observed, which are the initial exponential-like growth and the following linear growth. The variation of the COOH/COO- ratio indicates that the ionization degree of the polyelectrolyte molecules decreases at the initial stage of the multilayer buildup and then levels off after about eight bilayers. The as-prepared (BPEI/PAA)n films show a relatively smooth surface. However, great morphology changes occur after immersing these films in Cu2+ or Zn2+ solution. In the case of n > or =7, wavelike surface patterns are induced to form on the films. Both wavelength and fluctuation of these surface patterns show a systematical variation with an increase of the bilayer number. Moreover, thermal treatment can stabilize these patterns and enable the preservation of them after releasing the Cu2+ ions from the LbL films by acidic treatment. Interestingly, only Cu2+ and Zn2+ can induce the formation of such surface patterns, whereas Fe2+, Ca2+, Ag+, and Na+ cannot. This phenomenon may closely relate to the different natures of the metal ions.