Substrate specificity of Escherichia coli thymidine phosphorylase

Biochemistry (Mosc). 2007 Jan;72(1):21-8. doi: 10.1134/s0006297907010026.

Abstract

Substrate specificity of Escherichia coli thymidine phosphorylase to thymidine derivatives modified at 5' -, 3' -, and 2' ,3' - positions of the sugar moiety was studied. Equilibrium and kinetic constants (K(m), K(I), k(cat)) of the phosphorolysis reaction have been determined for 20 thymidine analogs. The results are compared with X-ray and molecular dynamics data. The most important hydrogen bonds in the enzyme-substrate complex are revealed.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Substitution*
  • Catalytic Domain
  • Crystallography, X-Ray
  • Escherichia coli / enzymology*
  • Hydrogen-Ion Concentration
  • Molecular Structure
  • Nucleosides / metabolism
  • Structure-Activity Relationship
  • Substrate Specificity
  • Thymidine / metabolism*
  • Thymidine Phosphorylase / chemistry*
  • Thymidine Phosphorylase / metabolism

Substances

  • Nucleosides
  • Thymidine Phosphorylase
  • Thymidine