Sequence and organization of the Heliothis virescens ascovirus genome

J Gen Virol. 2007 Apr;88(Pt 4):1120-1132. doi: 10.1099/vir.0.82651-0.

Abstract

The nucleotide sequence of the Heliothis virescens ascovirus (HvAV-3e) DNA genome was determined and characterized in this study. The circular genome consists of 186,262 bp, has a G+C content of 45.8 mol% and encodes 180 potential open reading frames (ORFs). Five unique homologous regions (hrs), 23 'baculovirus repeat ORFs' (bro) and genes encoding a caspase homologue and several enzymes involved in nucleotide replication and metabolism were found in the genome. Several ascovirus (AV)-, iridovirus- and baculovirus-homologous genes were identified. The genome is significantly larger than the recently sequenced genomes of Trichoplusia ni AV (TnAV-2c) and Spodoptera frugiperda AV (SfAV-1a). Gene-parity plots and overall similarity of ORFs indicate that HvAV-3e is related more closely to SfAV-1a than to TnAV-2c.

Publication types

  • Comparative Study
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Apoptosis / genetics
  • Ascoviridae / classification
  • Ascoviridae / genetics*
  • Baculoviridae
  • Base Composition
  • Base Sequence
  • DNA, Viral / chemistry
  • DNA, Viral / genetics
  • Genes, Viral
  • Genome, Viral*
  • Iridovirus / genetics
  • Molecular Sequence Data
  • Moths / virology*
  • Open Reading Frames / genetics
  • Phylogeny
  • Polymorphism, Restriction Fragment Length
  • Sequence Alignment
  • Sequence Analysis, DNA
  • Viral Proteins / genetics
  • Virus Replication / genetics

Substances

  • DNA, Viral
  • Viral Proteins

Associated data

  • GENBANK/EF133465