Dissecting molecular steps in chromatin domain activation during hematopoietic differentiation

Mol Cell Biol. 2007 Jun;27(12):4551-65. doi: 10.1128/MCB.00235-07. Epub 2007 Apr 16.

Abstract

GATA factors orchestrate hematopoiesis via multistep transcriptional mechanisms, but the interrelationships and importance of individual steps are poorly understood. Using complementation analysis with GATA-1-null cells and mice containing a hypomorphic allele of the chromatin remodeler BRG1, we dissected the pathway from GATA-1 binding to cofactor recruitment, chromatin loop formation, and transcriptional activation. Analysis of GATA-1-mediated activation of the beta-globin locus, in which GATA-1 assembles dispersed complexes at the promoters and the distal locus control region (LCR), revealed molecular intermediates, including GATA-1-independent and GATA-1-containing LCR subcomplexes, both defective in promoting loop formation. An additional intermediate consisted of an apparently normal LCR complex and a promoter complex with reduced levels of total RNA polymerase II (Pol II) and Pol II phosphorylated at serine 5 of the carboxy-terminal domain. Reduced BRG1 activity solely compromised Pol II and serine 5-phosphorylated Pol II occupancy at the promoter, phenocopying the LCR-deleted mouse. These studies defined a hierarchical order of GATA-1-triggered events at a complex locus and establish a novel mechanism of long-range gene regulation.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Alleles
  • Animals
  • Cell Differentiation*
  • Cell Line
  • Chromatin / chemistry
  • Chromatin / metabolism*
  • Chromatin Immunoprecipitation
  • DNA Helicases / genetics
  • DNA Helicases / metabolism
  • Erythroid Cells / cytology
  • Erythroid Cells / metabolism
  • GATA1 Transcription Factor / genetics
  • GATA1 Transcription Factor / physiology*
  • Gene Deletion
  • Gene Expression Regulation*
  • Globins / genetics
  • Hematopoietic System / physiology*
  • Locus Control Region
  • Mice
  • Mice, Knockout
  • Models, Genetic
  • Nuclear Proteins / genetics
  • Nuclear Proteins / metabolism
  • Phosphorylation
  • Promoter Regions, Genetic
  • Protein Structure, Tertiary
  • RNA Polymerase II / chemistry
  • RNA Polymerase II / metabolism
  • Temperature
  • Transcription Factors / genetics
  • Transcription Factors / metabolism

Substances

  • Chromatin
  • GATA1 Transcription Factor
  • Gata1 protein, mouse
  • Nuclear Proteins
  • Transcription Factors
  • Globins
  • RNA Polymerase II
  • Smarca4 protein, mouse
  • DNA Helicases