Alpha-amylase starch binding domains: cooperative effects of binding to starch granules of multiple tandemly arranged domains

Appl Environ Microbiol. 2007 Jun;73(12):3833-7. doi: 10.1128/AEM.02628-06. Epub 2007 Apr 27.

Abstract

The Lactobacillus amylovorus alpha-amylase starch binding domain (SBD) is a functional domain responsible for binding to insoluble starch. Structurally, this domain is dissimilar from other reported SBDs because it is composed of five identical tandem modules of 91 amino acids each. To understand adsorption phenomena specific to this SBD, the importance of their modular arrangement in relationship to binding ability was investigated. Peptides corresponding to one, two, three, four, or five modules were expressed as His-tagged proteins. Protein binding assays showed an increased capacity of adsorption as a function of the number of modules, suggesting that each unit of the SBD may act in an additive or synergic way to optimize binding to raw starch.

Publication types

  • Comparative Study
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adsorption
  • DNA Primers / genetics
  • Electrophoresis, Polyacrylamide Gel
  • Lactobacillus acidophilus / enzymology*
  • Plasmids / genetics
  • Protein Binding / genetics
  • Protein Structure, Tertiary / genetics
  • Starch / metabolism*
  • alpha-Amylases / genetics*
  • alpha-Amylases / metabolism

Substances

  • DNA Primers
  • Starch
  • alpha-Amylases