The polyhydroxyalkanoate genes of a stress resistant Antarctic Pseudomonas are situated within a genomic island

Plasmid. 2007 Nov;58(3):240-8. doi: 10.1016/j.plasmid.2007.05.003. Epub 2007 Jul 16.

Abstract

Pseudomonas sp. 14-3 is an Antarctic bacterium that shows high stress resistance in association with high polyhydroxybutyrate (PHB) production. In this paper genes involved in PHB biosynthesis (phaRBAC) were found within a genomic island named pha-GI. Numerous mobile elements or proteins associated with them, such as an integrase, insertion sequences, a bacterial group II intron, a complete Type I protein secretion system and IncP plasmid-related proteins were detected among the 28 ORFs identified in this large genetic element (32.3kb). The G+C distribution was not homogeneous, likely reflecting a mosaic structure that contains regions from diverse origins. pha-GI has strong similarities with genomic islands found in diverse Proteobacteria, including Burkholderiales species and Azotobacter vinelandii. The G+C content, phylogeny inference and codon usage analysis showed that the phaBAC cluster itself has a complex mosaic structure and indicated that the phaB and phaC genes were acquired by horizontal transfer, probably derived from Burkholderiales. These results describe for the first time a pha cluster located within a genomic island, and suggest that horizontal transfer of pha genes is a mechanism of adaptability to stress conditions such as those found in the extreme Antarctic environment.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Acyltransferases / genetics*
  • Antarctic Regions
  • Bacterial Proteins / genetics
  • Bacterial Proteins / metabolism
  • Base Composition
  • Base Sequence
  • Cloning, Molecular
  • DNA-Binding Proteins / genetics
  • Genes, Bacterial*
  • Genomic Islands*
  • Hydroxybutyrates / metabolism*
  • Molecular Sequence Data
  • Open Reading Frames
  • Phylogeny
  • Polyhydroxyalkanoates / biosynthesis
  • Polyhydroxyalkanoates / genetics*
  • Pseudomonas / genetics*
  • Pseudomonas / metabolism
  • Repressor Proteins / genetics
  • Sequence Alignment

Substances

  • Bacterial Proteins
  • DNA-Binding Proteins
  • Hydroxybutyrates
  • Polyhydroxyalkanoates
  • Repressor Proteins
  • Acyltransferases
  • poly(3-hydroxyalkanoic acid) synthase