Nuclear magnetic resonance structure of the N-terminal domain of nonstructural protein 3 from the severe acute respiratory syndrome coronavirus

J Virol. 2007 Nov;81(21):12049-60. doi: 10.1128/JVI.00969-07. Epub 2007 Aug 29.

Abstract

This paper describes the structure determination of nsp3a, the N-terminal domain of the severe acute respiratory syndrome coronavirus (SARS-CoV) nonstructural protein 3. nsp3a exhibits a ubiquitin-like globular fold of residues 1 to 112 and a flexibly extended glutamic acid-rich domain of residues 113 to 183. In addition to the four beta-strands and two alpha-helices that are common to ubiquitin-like folds, the globular domain of nsp3a contains two short helices representing a feature that has not previously been observed in these proteins. Nuclear magnetic resonance chemical shift perturbations showed that these unique structural elements are involved in interactions with single-stranded RNA. Structural similarities with proteins involved in various cell-signaling pathways indicate possible roles of nsp3a in viral infection and persistence.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Dose-Response Relationship, Drug
  • Magnetic Resonance Spectroscopy / methods*
  • Mass Spectrometry
  • Models, Molecular
  • Molecular Conformation
  • Molecular Sequence Data
  • Protein Conformation
  • Protein Structure, Secondary
  • Protein Structure, Tertiary
  • RNA, Viral / chemistry
  • RNA-Dependent RNA Polymerase / chemistry*
  • RNA-Dependent RNA Polymerase / metabolism
  • Sequence Homology, Amino Acid
  • Severe acute respiratory syndrome-related coronavirus / metabolism*
  • Viral Nonstructural Proteins / chemistry*
  • Viral Nonstructural Proteins / metabolism
  • Viral Proteins / chemistry

Substances

  • RNA, Viral
  • Viral Nonstructural Proteins
  • Viral Proteins
  • Nsp3 protein, SARS-CoV
  • RNA-Dependent RNA Polymerase

Associated data

  • PDB/2GRI
  • PDB/2IDY