oneChannelGUI: a graphical interface to Bioconductor tools, designed for life scientists who are not familiar with R language

Bioinformatics. 2007 Dec 15;23(24):3406-8. doi: 10.1093/bioinformatics/btm469. Epub 2007 Sep 17.

Abstract

OneChannelGUI is an add-on Bioconductor package providing a new set of functions extending the capability of the affylmGUI package. This library provides a graphical interface (GUI) for Bioconductor libraries to be used for quality control, normalization, filtering, statistical validation and data mining for single channel microarrays. Affymetrix 3' expression (IVT) arrays as well as the new whole transcript expression arrays, i.e. gene/exon 1.0 ST, are actually implemented. oneChannelGUI is available for most platforms on which R runs, i.e. Windows and Unix-like machines.

Availability: http://www.bioconductor.org/packages/2.0/bioc/html/oneChannelGUI.html

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Algorithms*
  • Biological Science Disciplines / methods
  • Computer Graphics*
  • Gene Expression Profiling / methods*
  • Oligonucleotide Array Sequence Analysis / methods*
  • Programming Languages*
  • Software*
  • User-Computer Interface*