Full-length genome sequences of hepatitis C virus subtype 4f

J Gen Virol. 2007 Nov;88(Pt 11):2985-2990. doi: 10.1099/vir.0.83151-0.

Abstract

Hepatitis C virus genotype 4 (HCV-4) is very common in central Africa, prevalent in the Middle East, and is becoming increasingly frequent among southern Europeans. We have determined the complete nucleotide sequences of HCV-4f strains and investigated their phylogenetic relationships with other genotypes. We amplified the complete genome of two HCV subtype 4f strains, IFBT84 and IFBT88. The HCV-4f strains have a total of 9181 and 9304 nt, respectively, including the 5' untranslated region followed by a single open reading frame. There was no evidence of genomic recombination in the IFBT84 and IFBT88 strains. The sequences of the HCV-4f strain genomes are closer to those of HCV-1b than to genotypes 2, 3, 5 and 6. It is important to know the full-length sequences of HCV-4 subtypes in order to classify them correctly and to obtain more detailed knowledge about HCV epidemiology and sensitivity to interferon.

MeSH terms

  • 5' Untranslated Regions
  • Base Sequence
  • Genome, Viral*
  • Hepacivirus / classification
  • Hepacivirus / genetics*
  • Hepacivirus / isolation & purification
  • Hepatitis C / virology
  • Humans
  • Molecular Sequence Data
  • Open Reading Frames
  • Phylogeny
  • Sequence Analysis, DNA
  • Sequence Homology

Substances

  • 5' Untranslated Regions

Associated data

  • GENBANK/EF589160
  • GENBANK/EF589161