X-ray absorption spectroscopic characterization of a cytochrome P450 compound II derivative

Proc Natl Acad Sci U S A. 2008 Jun 17;105(24):8179-84. doi: 10.1073/pnas.0708299105. Epub 2008 Jan 3.

Abstract

The cytochrome P450 enzyme CYP119, its compound II derivative, and its nitrosyl complex were studied by iron K-edge x-ray absorption spectroscopy. The compound II derivative was prepared by reaction of the resting enzyme with peroxynitrite and had a lifetime of approximately 10 s at 23 degrees C. The CYP119 nitrosyl complex was prepared by reaction of the enzyme with nitrogen monoxide gas or with a nitrosyl donor and was stable at 23 degrees C for hours. Samples of CYP119 and its derivatives were studied by x-ray absorption spectroscopy at temperatures below 140 (K) at the Advanced Photon Source of Argonne National Laboratory. The x-ray absorption near-edge structure spectra displayed shifts in edge and pre-edge energies consistent with increasing effective positive charge on iron in the series native CYP119 < CYP119 nitrosyl complex < CYP119 compound II derivative. Extended x-ray absorption fine structure spectra were simulated with good fits for k = 12 A(-1) for native CYP119 and k = 13 A(-1) for both the nitrosyl complex and the compound II derivative. The important structural features for the compound II derivative were an iron-oxygen bond length of 1.82 A and an iron-sulfur bond length of 2.24 A, both of which indicate an iron-oxygen single bond in a ferryl-hydroxide, Fe(IV)OH, moiety.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Absorptiometry, Photon
  • Archaeal Proteins / chemistry*
  • Cytochrome P-450 Enzyme System / chemistry*
  • Iron / chemistry
  • Nitric Oxide / chemistry
  • Peroxynitrous Acid / chemistry
  • Porphyrins / chemistry
  • Reactive Oxygen Species / chemistry*

Substances

  • Archaeal Proteins
  • Porphyrins
  • Reactive Oxygen Species
  • Peroxynitrous Acid
  • Nitric Oxide
  • Cytochrome P-450 Enzyme System
  • Iron
  • CYP119 protein, Sulfolobus solfataricus