The investigation of heterogeneity remains an essential but difficult issue in the conduct of meta-analysis. We reviewed standard and graphical methods used to explore heterogeneity in meta-analysis and publications from January 2005 to April 2007 regarding meta-analyses that focused on perinatal health topics. We assessed their approaches to the investigation of heterogeneity, including: (1) whether statistical testing for heterogeneity was performed and, if so, which test was used, (2) how a finding of statistically significant heterogeneity was handled, and (3) how the analyses were conducted in the presence of heterogeneity.