dCHD3, a novel ATP-dependent chromatin remodeler associated with sites of active transcription

Mol Cell Biol. 2008 Apr;28(8):2745-57. doi: 10.1128/MCB.01839-07. Epub 2008 Feb 4.

Abstract

ATP-dependent chromatin remodelers of the CHD family play important roles during differentiation and development. Three CHD proteins, dMi-2, dChd1, and Kismet, have been described for Drosophila melanogaster. Here, we study dCHD3, a novel member of the CHD family. dCHD3 is related in sequence to dMi-2 but lacks several domains implicated in dMi-2 function. We demonstrate that dCHD3 is a nuclear protein and that expression is tightly regulated during fly development. Recombinant dCHD3 remodels mono- and polynucleosomes in an ATP-dependent manner in vitro. Its chromodomains are critical for nucleosome binding and remodeling. Unlike dMi-2, dCHD3 exists as a monomer. Nevertheless, both proteins colocalize with RNA polymerase II to actively transcribed regions on polytene chromosomes, suggesting that both remodelers participate in the process of transcription.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adenosine Triphosphatases / genetics
  • Adenosine Triphosphatases / metabolism
  • Adenosine Triphosphate / metabolism*
  • Animals
  • Autoantigens / genetics
  • Autoantigens / metabolism
  • Chromatin Assembly and Disassembly / genetics*
  • Chromosomes / genetics
  • DNA / metabolism
  • DNA Helicases / genetics
  • DNA Helicases / metabolism*
  • Drosophila Proteins / genetics
  • Drosophila Proteins / metabolism*
  • Drosophila melanogaster / embryology
  • Drosophila melanogaster / genetics
  • Drosophila melanogaster / growth & development
  • Drosophila melanogaster / metabolism
  • Gene Expression Regulation, Developmental
  • Histones / metabolism
  • Nucleosomes / enzymology
  • Phylogeny
  • Protein Binding
  • Transcription, Genetic / genetics*

Substances

  • Autoantigens
  • Drosophila Proteins
  • Histones
  • Mi-2 protein, Drosophila
  • Nucleosomes
  • Adenosine Triphosphate
  • DNA
  • Adenosine Triphosphatases
  • CHD3 protein, Drosophila
  • DNA Helicases