Labrys portucalensis sp. nov., a fluorobenzene-degrading bacterium isolated from an industrially contaminated sediment in northern Portugal

Int J Syst Evol Microbiol. 2008 Mar;58(Pt 3):692-8. doi: 10.1099/ijs.0.65472-0.

Abstract

A detailed classification of a novel bacterial strain, designated F11(T), capable of degrading fluorobenzene as a sole carbon and energy source, was performed by using a polyphasic approach. This Gram-negative, rod-shaped, non-motile, non-spore-forming, aerobic bacterium was isolated from a sediment sample collected from an industrially contaminated site in northern Portugal. The predominant whole-cell fatty acids were C(19 : 0) cyclo omega8c, C(16 : 0), C(18 : 1)omega7c, C(18 : 0), C(18 : 0) 3-OH and C(16 : 0) 3-OH. The G+C content of the DNA was 62.9 mol% and the major respiratory quinone was ubiquinone 10 (UQ-10). 16S rRNA gene sequence analysis revealed that strain F11(T) was a member of the class Alphaproteobacteria and was phylogenetically related to the genus Labrys, having sequence similarities of 95.6 and 93.1 % to the type strains of Labrys monachus and Labrys methylaminiphilus, respectively. DNA-DNA hybridization experiments revealed levels of relatedness of <70 % between strain F11(T) and the type strains of L. monachus and L. methylaminiphilus (38.6 and 34.1 %, respectively), justifying the classification of strain F11(T) as representing a novel species of the genus Labrys. The name Labrys portucalensis sp. nov. is proposed for this organism. The type strain is F11(T) (=LMG 23412(T)=DSM 17916(T)).

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Alphaproteobacteria / classification*
  • Alphaproteobacteria / genetics
  • Alphaproteobacteria / isolation & purification
  • Bacterial Typing Techniques
  • Base Composition
  • Biodegradation, Environmental
  • DNA, Bacterial / analysis
  • DNA, Ribosomal / analysis
  • Fatty Acids / analysis
  • Fluorobenzenes / metabolism*
  • Genes, rRNA
  • Geologic Sediments / microbiology*
  • Industry*
  • Molecular Sequence Data
  • Nucleic Acid Hybridization
  • Phylogeny
  • Portugal
  • RNA, Ribosomal, 16S / genetics
  • Sequence Analysis, DNA
  • Soil Pollutants*
  • Species Specificity

Substances

  • DNA, Bacterial
  • DNA, Ribosomal
  • Fatty Acids
  • Fluorobenzenes
  • RNA, Ribosomal, 16S
  • Soil Pollutants

Associated data

  • GENBANK/AY362040