Unexpected roles for UPF1 in HIV-1 RNA metabolism and translation

RNA. 2008 May;14(5):914-27. doi: 10.1261/rna.829208. Epub 2008 Mar 27.

Abstract

The HIV-1 ribonucleoprotein (RNP) contains the major structural protein, pr55(Gag), viral genomic RNA, as well as the host protein, Staufen1. In this report, we show that the nonsense-mediated decay (NMD) factor UPF1 is also a component of the HIV-1 RNP. We investigated the role of UPF1 in HIV-1-expressing cells. Depletion of UPF1 by siRNA resulted in a dramatic reduction in steady-state HIV-1 RNA and pr55(Gag). Pr55(Gag) synthesis, but not the cognate genomic RNA, was efficiently rescued by expression of an siRNA-insensitive UPF1, demonstrating that UPF1 positively influences HIV-1 RNA translatability. Conversely, overexpression of UPF1 led to a dramatic up-regulation of HIV-1 expression at the RNA and protein synthesis levels. The effects of UPF1 on HIV-1 RNA stability were observed in the nucleus and cytoplasm and required ongoing translation. We also demonstrate that the effects exerted by UPF1 on HIV-1 expression were dependent on its ATPase activity, but were separable from its role in NMD and did not require interaction with UPF2.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Base Sequence
  • Cell Line
  • Cell Nucleus / metabolism
  • Cytoskeletal Proteins / genetics
  • Cytoskeletal Proteins / metabolism
  • Genes, gag
  • HIV-1 / genetics*
  • HIV-1 / metabolism*
  • HeLa Cells
  • Humans
  • Mutation
  • Protein Biosynthesis
  • Protein Precursors / genetics
  • Protein Precursors / metabolism
  • RNA Helicases
  • RNA Stability
  • RNA, Small Interfering / genetics
  • RNA, Viral / genetics*
  • RNA, Viral / metabolism*
  • RNA-Binding Proteins / genetics
  • RNA-Binding Proteins / metabolism
  • Recombinant Proteins / genetics
  • Recombinant Proteins / metabolism
  • Ribonucleoproteins / genetics
  • Ribonucleoproteins / metabolism
  • Trans-Activators / antagonists & inhibitors
  • Trans-Activators / genetics
  • Trans-Activators / metabolism*
  • Transfection
  • gag Gene Products, Human Immunodeficiency Virus / genetics
  • gag Gene Products, Human Immunodeficiency Virus / metabolism

Substances

  • Cytoskeletal Proteins
  • Protein Precursors
  • RNA, Small Interfering
  • RNA, Viral
  • RNA-Binding Proteins
  • Recombinant Proteins
  • Ribonucleoproteins
  • STAU1 protein, human
  • Trans-Activators
  • gag Gene Products, Human Immunodeficiency Virus
  • p55 gag precursor protein, Human immunodeficiency virus 1
  • RNA Helicases
  • UPF1 protein, human