The use of sophisticated air pollution modeling systems to evaluate the impact of different industrial plant emissions is currently done in an extensive way. MM5-CMAQ (PSU/NCAR and EPA, USA) is one of the most applicable air quality modeling systems to evaluate those impacts. In this contribution we present the methodology and results obtained when applying the MM5-CMAQ air quality modeling system for evaluating the potential impact of an incinerator in San Sebastián (Basque Country, Spain). We have used the EMIMO (UPM, Spain) emission model to simulate the emissions from biogenic and anthropogenic sources including traffic and tertiary sector sources. The study includes the air quality impact of a highway located near the incinerator named A8 and 6 industrial plants which already exist. The impact study has been compared with the results obtained from this highway impact and the 6 industrial plants which are normally operating during the last 30 years. The system has been prepared to simulate also Cadmium, Arsenic, Nickel, Lead and Benzo(a)pyrene air quality impacts. The PCDD/F air concentrations have been determined for the 16 toxic dioxins and furans as determined in the bibliography. The criteria pollutants such as CO, NOx, SO(2), PM(10) and O(3) have also been determined according to the different EU Directives which limit the values of such a pollutants for different periods of time.