Sequence analysis of the capsid gene of Aichi viruses detected from Japan, Bangladesh, Thailand, and Vietnam

J Med Virol. 2008 Jul;80(7):1222-7. doi: 10.1002/jmv.21193.

Abstract

Sequence analysis of the capsid gene of Aichi viruses was performed on 12 strains detected in Japan, Bangladesh, Thailand, and Vietnam during 2002-2005. The phylogenetic tree constructed from 17 nucleotide sequences of the capsid gene of the strains studied and reference strains demonstrated that Aichi virus strains clustered into two branches. A classification of Aichi viruses based on the capsid gene was proposed, in which lineage I consists of the Aichi virus strains detected from Japan, Thailand, Vietnam, and Germany, and lineage II includes Bangladeshi strains and a Brazilian strain.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Bangladesh / epidemiology
  • Capsid Proteins / chemistry
  • Capsid Proteins / genetics*
  • Genome, Viral
  • Humans
  • Japan / epidemiology
  • Kobuvirus / classification
  • Kobuvirus / genetics*
  • Kobuvirus / isolation & purification
  • Molecular Sequence Data
  • Phylogeny
  • Picornaviridae Infections / epidemiology*
  • Picornaviridae Infections / virology
  • Sequence Alignment
  • Thailand / epidemiology
  • Vietnam / epidemiology

Substances

  • Capsid Proteins