PiRNA-like RNAs in the marsupial Monodelphis domestica identify transcription clusters and likely marsupial transposon targets

Mamm Genome. 2008 Aug;19(7-8):581-6. doi: 10.1007/s00335-008-9109-x. Epub 2008 May 13.

Abstract

PIWI-interacting RNAs (piRNAs) are a recently discovered class of small noncoding RNAs that have been detected in human, mouse, rat, zebrafish, and Drosophila genomes. We have utilized a size-directed small-RNA cloning procedure to clone and map more than 300 candidate piRNA-like small RNAs in the genome of the marsupial species Monodelphis domestica. Our results are consistent with those from other species in that the piRNA-like candidate sequences range in size from 28 to 31 nucleotides, show a pronounced preference for uridine at the 5' end, are transcribed from a few large clusters, appear to target transposons, and display virtually no sequence conservation.

Publication types

  • Research Support, N.I.H., Extramural

MeSH terms

  • Animals
  • Base Sequence
  • Clone Cells
  • DNA Transposable Elements / genetics*
  • Male
  • Molecular Sequence Data
  • Monodelphis / genetics*
  • Multigene Family*
  • RNA, Small Interfering / genetics*
  • Software
  • Transcription, Genetic*

Substances

  • DNA Transposable Elements
  • RNA, Small Interfering