Frameshift events associated with the lysyl-tRNA and the rare arginine codon, AGA, in Escherichia coli: a case study involving the human Relaxin 2 protein

Protein Expr Purif. 2008 Aug;60(2):110-6. doi: 10.1016/j.pep.2008.02.016. Epub 2008 Mar 5.

Abstract

Human Relaxin 2 is an insulin-related peptide hormone with a mass of 19,084 Da. The mRNA contains a number of arginine codons that are rarely used by Escherichia coli to produce highly expressed proteins. As a result, expressing this recombinant protein in E. coli is problematic. When human Relaxin 2 was expressed in E. coli BL21 (DE3), several forms of the protein were made. One species had the expected molecular weight (19,084 Da). A second species observed had a molecular weight of 21,244 Da. A third minor species had a molecular weight of 17,118 Da. These aberrant molecular weights can be explained as follows. First, a sequence CGA-AAA-AAG-AGA, containing the rare arginine codons CGA and AGA was the site of the +1 frameshift that generated the 21,244 Da species. Since there was a limited supply of this arginyl-tRNA, the peptidyl-tRNA moved +1 nucleotide to occupy the codon and resumed protein synthesis. Second, a -1 frameshift associated with 'slippery A' sequence XXA-AAA-AAG accounted for 10% of the product with a mass of 17,118 Da. Presumably, the shift to -1 also occurred because there was a paucity of the arginyl-tRNAArgucu. Introduction of a plasmid coding for the cognate tRNA for AGA and site directed mutagenesis prevented the formation of both frameshift species.

MeSH terms

  • Amino Acid Sequence
  • Arginine / genetics*
  • Base Sequence
  • Cloning, Molecular
  • Codon*
  • Escherichia coli / genetics*
  • Fermentation
  • Frameshift Mutation*
  • Humans
  • Molecular Sequence Data
  • Mutagenesis, Site-Directed
  • Open Reading Frames
  • RNA, Transfer, Lys / genetics*
  • Relaxin / genetics*
  • Relaxin / isolation & purification
  • Spectrometry, Mass, Electrospray Ionization
  • Tandem Mass Spectrometry

Substances

  • Codon
  • RNA, Transfer, Lys
  • Relaxin
  • Arginine