Structural and mechanistic insights into type II trypanosomatid tryparedoxin-dependent peroxidases

Biochem J. 2008 Sep 15;414(3):375-81. doi: 10.1042/BJ20080889.

Abstract

TbTDPX (Trypanosoma brucei tryparedoxin-dependent peroxidase) is a genetically validated drug target in the fight against African sleeping sickness. Despite its similarity to members of the GPX (glutathione peroxidase) family, TbTDPX2 is functional as a monomer, lacks a selenocysteine residue and relies instead on peroxidatic and resolving cysteine residues for catalysis and uses tryparedoxin rather than glutathione as electron donor. Kinetic studies indicate a saturable Ping Pong mechanism, unlike selenium-dependent GPXs, which display infinite K(m) and V(max) values. The structure of the reduced enzyme at 2.1 A (0.21 nm) resolution reveals that the catalytic thiol groups are widely separated [19 A (0.19 nm)] and thus unable to form a disulphide bond without a large conformational change in the secondary-structure architecture, as reported for certain plant GPXs. A model of the oxidized enzyme structure is presented and the implications for small-molecule inhibition are discussed.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Binding Sites
  • Crystallography, X-Ray
  • Cytosol / enzymology
  • Cytosol / metabolism
  • Kinetics
  • Mitochondria / enzymology
  • Mitochondria / metabolism
  • Models, Molecular
  • Molecular Sequence Data
  • Peroxidases / chemistry*
  • Peroxidases / metabolism
  • Protozoan Proteins / chemistry*
  • Protozoan Proteins / metabolism
  • Recombinant Proteins / chemistry
  • Recombinant Proteins / metabolism
  • Sequence Alignment
  • Trypanosoma brucei brucei / enzymology*

Substances

  • Protozoan Proteins
  • Recombinant Proteins
  • Peroxidases
  • tryparedoxin peroxidase

Associated data

  • PDB/2VUP