Completion of the sequence of rice gall dwarf virus from Guangxi, China

Arch Virol. 2008;153(9):1737-41. doi: 10.1007/s00705-008-0167-x. Epub 2008 Jul 26.

Abstract

The complete nucleotide sequences of segments S2, S3, S5, and S8-S11 of a Rice gall dwarf virus isolate from Guangxi Province, China, (RGDV-GX) were determined, completing the sequence of this isolate. The total genome (25,567nt) was similar in organization to a recently reported Thailand isolate (RGDV-T). A previously unreported second segment-specific repeat of 7 or 8nt was detected close to the 3'-end of segments S3, S5, and S8. The 3'-UTR of RGDV-GX S4 was 139nt shorter than that of RGDV-T; the insertion in RGDV-T contains a 34-nt inverted repeat, with the 3'-terminus probably abolishing the expected stem loop structure.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • 3' Untranslated Regions
  • Amino Acid Sequence
  • Base Sequence
  • China
  • Genome, Viral
  • Molecular Sequence Data
  • Oryza / virology*
  • Plant Diseases / virology*
  • Plant Tumors / virology*
  • Reoviridae / genetics*
  • Reoviridae / isolation & purification
  • Sequence Alignment
  • Sequence Analysis, DNA

Substances

  • 3' Untranslated Regions

Associated data

  • GENBANK/DQ333947
  • GENBANK/DQ364682
  • GENBANK/DQ364683
  • GENBANK/DQ364684
  • GENBANK/DQ499820
  • GENBANK/DQ499821
  • GENBANK/DQ499823