Molecular characterization of rare bovine group A rotavirus G15P[11] and G15P[21] strains from eastern India: identification of simian SA11-like VP6 genes in G15P[21] strains

Virus Genes. 2008 Oct;37(2):241-9. doi: 10.1007/s11262-008-0260-y. Epub 2008 Aug 5.

Abstract

During a surveillance study (November 2001-March 2005), one rare G15P[11] and two rare G15P[21] bovine group A rotavirus strains were detected in diarrhoeic calves in Eastern India. Sequence analysis of the VP8*, VP6, NSP4 and NSP5 genes of the G15P[11] strain confirmed its bovine origin. Although the NSP4 and NSP5 genes of the two G15P[21] strains were of bovine origin, their VP6 genes shared higher nucleotide and amino acid identities with simian strain SA11 (92.5-93.1% and 98.5-98.7%) than bovine strains (88.5-88.9% and 97-97.2%), and by phylogenetic analysis, exhibited clustering with SA11, distantly related to bovine strains. All these pointed towards a possible reassortment event of VP6 gene between bovine and simian (SA11-like) strains. Therefore, the present study provided molecular evidence for bovine origin of G15 strains and revealed a rare instance of genetic diversity in the bovine VP6 gene, otherwise conserved in group A rotavirus strains from cattle.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Cattle
  • Cattle Diseases / virology*
  • India
  • Molecular Sequence Data
  • Phylogeny
  • Reassortant Viruses / classification*
  • Reassortant Viruses / genetics
  • Reassortant Viruses / isolation & purification*
  • Rotavirus / classification*
  • Rotavirus / genetics
  • Rotavirus / isolation & purification*
  • Rotavirus Infections / veterinary*
  • Rotavirus Infections / virology
  • Sequence Alignment
  • Viral Nonstructural Proteins / genetics
  • Viral Structural Proteins / genetics*

Substances

  • Viral Nonstructural Proteins
  • Viral Structural Proteins

Associated data

  • GENBANK/EF200559
  • GENBANK/EF200560
  • GENBANK/EF200561
  • GENBANK/EF200562
  • GENBANK/EF200563
  • GENBANK/EF200564
  • GENBANK/EF200567
  • GENBANK/EF200568
  • GENBANK/EF200569
  • GENBANK/EF200574
  • GENBANK/EF200575
  • GENBANK/EF200576
  • GENBANK/EF200581
  • GENBANK/EF200582
  • GENBANK/EU682404