REDOR NMR characterization of DNA packaging in bacteriophage T4

J Mol Biol. 2008 Oct 17;382(4):1031-42. doi: 10.1016/j.jmb.2008.07.077. Epub 2008 Aug 5.

Abstract

Bacteriophage T4 is a large-tailed Escherichia coli virus whose capsid is 120x86 nm. ATP-driven DNA packaging of the T4 capsid results in the loading of a 171-kb genome in less than 5 min during viral infection. We have isolated 50-mg quantities of uniform (15)N- and [epsilon-(15)N]lysine-labeled bacteriophage T4. We have also introduced (15)NH(4)(+) into filled, unlabeled capsids from synthetic medium by exchange. We have examined lyo- and cryoprotected lyophilized T4 using (15)N{(31)P} and (31)P{(15)N} rotational-echo double resonance. The results of these experiments have shown that (i) packaged DNA is in an unperturbed duplex B-form conformation; (ii) the DNA phosphate negative charge is balanced by lysyl amines (3.2%), polyamines (5.8%), and monovalent cations (40%); and (iii) 11% of lysyl amines, 40% of -NH(2) groups of polyamines, and 80% of monovalent cations within the lyophilized T4 capsid are involved in the DNA charge balance. The NMR evidence suggests that DNA enters the T4 capsid in a charge-unbalanced state. We propose that electrostatic interactions may provide free energy to supplement the nanomotor-driven T4 DNA packaging.

Publication types

  • Research Support, N.I.H., Extramural

MeSH terms

  • Amines / chemistry
  • Bacteriophage T4 / genetics*
  • Cations / chemistry
  • DNA Packaging*
  • DNA, Viral / chemistry
  • Models, Molecular
  • Molecular Structure
  • Nuclear Magnetic Resonance, Biomolecular*
  • Nucleic Acid Conformation*
  • Phosphates / chemistry
  • Purines / chemistry
  • Pyrimidines / chemistry

Substances

  • Amines
  • Cations
  • DNA, Viral
  • Phosphates
  • Purines
  • Pyrimidines