Stereoselective formation of a cyclobutane pyrimidine dimer by using N4-acetyl protection of the cytosine base

Nucleic Acids Symp Ser (Oxf). 2008:(52):437-8. doi: 10.1093/nass/nrn222.

Abstract

The cytosine base in DNA undergoes hydrolytic deamination at a considerable rate when UV radiation induces formation of a cyclobutane pyrimidine dimer (CPD) with an adjacent pyrimidine base. As a part of our study on the synthesis of CPD-containing oligonucleotides, we have prepared properly-protected thymidylyl-(3' 5')-N(4)-acetyl-2'-deoxycytidine, and the solution of this compound was UV-irradiated using acetophenone as a sensitizer. In this reaction, hydrolysis of the acetylamino group occurred, and a trans-syn cyclobutane thymine-uracil dimer with the syn-anti conformation around the glycosidic bonds was formed stereoselectively.

MeSH terms

  • Cyclobutanes / chemistry*
  • Cytosine / chemistry*
  • Deoxycytidine / analogs & derivatives*
  • Deoxycytidine / chemistry
  • Pyrimidine Dimers / chemistry*
  • Pyrimidine Dimers / radiation effects
  • Stereoisomerism
  • Thymine / analogs & derivatives*
  • Thymine / chemistry
  • Ultraviolet Rays
  • Uracil / analogs & derivatives*
  • Uracil / chemistry

Substances

  • 4-N-acetyl-2'-deoxycytidine
  • Cyclobutanes
  • Pyrimidine Dimers
  • Deoxycytidine
  • Uracil
  • Cytosine
  • Thymine