Folding and unfolding single RNA molecules under tension

Curr Opin Chem Biol. 2008 Dec;12(6):640-6. doi: 10.1016/j.cbpa.2008.08.011. Epub 2008 Sep 9.

Abstract

Single-molecule force spectroscopy constitutes a powerful method for probing RNA folding: It allows the kinetic, energetic, and structural properties of intermediate and transition states to be determined quantitatively, yielding new insights into folding pathways and energy landscapes. Recent advances in experimental and theoretical methods, including fluctuation theorems, kinetic theories, novel force clamps, and ultrastable instruments, have opened new avenues for study. These tools have been used to probe folding in simple model systems, for example, RNA and DNA hairpins. Knowledge gained from such systems is helping to build our understanding of more complex RNA structures composed of multiple elements, as well as how nucleic acids interact with proteins involved in key cellular activities, such as transcription and translation.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't
  • Review

MeSH terms

  • Enzymes / metabolism
  • Humans
  • Models, Molecular
  • Nucleic Acid Conformation
  • Nucleic Acid Denaturation
  • RNA / chemistry*
  • RNA / metabolism*
  • Spectrum Analysis

Substances

  • Enzymes
  • RNA