Prequips--an extensible software platform for integration, visualization and analysis of LC-MS/MS proteomics data

Bioinformatics. 2009 Mar 1;25(5):682-3. doi: 10.1093/bioinformatics/btp005. Epub 2009 Jan 6.

Abstract

Summary: We describe an integrative software platform, Prequips, for comparative proteomics-based systems biology analysis that: (i) integrates all information generated from mass spectrometry (MS)-based proteomics as well as from basic proteomics data analysis tools, (ii) visualizes such information for various proteomic analyses via graphical interfaces and (iii) links peptide and protein abundances to external tools often used in systems biology studies.

Availability: http://prequips.sourceforge.net

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Chromatography, Liquid / methods*
  • Computational Biology / methods
  • Computer Graphics
  • Databases, Protein
  • Internet
  • Proteins / chemistry
  • Proteome / analysis*
  • Proteomics / methods*
  • Software*
  • Systems Biology / methods
  • Tandem Mass Spectrometry / methods*
  • User-Computer Interface

Substances

  • Proteins
  • Proteome