Identification and characterization of RBEL1 subfamily of GTPases in the Ras superfamily involved in cell growth regulation

J Biol Chem. 2009 Jul 3;284(27):18129-42. doi: 10.1074/jbc.M109.009597. Epub 2009 May 11.

Abstract

Recently, we reported the identification of a novel gene named RBEL1 (Rab-like protein 1) and characterized its two encoded isoforms, RBEL1A and RBEL1B, that function as novel GTPases of Ras superfamily. Here we report the identification of two additional splice variants of RBEL1 that we have named RBEL1C and -D. All four RBEL1 isoforms (A, B, C, and D) have identical N termini harboring the Rab-like GTPase domains but contain variable C termini. Although all isoforms can be detected in both cytoplasm and nucleus, RBEL1A is predominantly cytoplasmic, whereas RBEL1B is mostly nuclear. RBEL1C and -D, by contrast, are evenly distributed between the cytoplasm and nucleus. Furthermore, all four RBEL1 proteins are also capable of associating with cellular membrane. The RBEL1 proteins also exhibit a unique nucleotide-binding potential and, whereas the larger A and B isoforms are mainly GTP-bound, the smaller C and D variants bind to both GTP and GDP. Furthermore, a regulatory region at amino acid position 236-302 immediately adjacent to the GTP-binding domain is important for GTP-binding potential of RBEL1A, because deletion of this region converts RBEL1A from predominantly GTP-bound to GDP-bound. RBEL1 knockdown via RNA interference results in marked cell growth suppression, which is associated with morphological and biochemical features of apoptosis as well as inhibition of extracellular signal-regulated kinase phosphorylation. Taken together, our results indicate that RBEL1 proteins are linked to cell growth and survival and possess unique biochemical, cellular, and functional characteristics and, therefore, appear to form a novel subfamily of GTPases within the Ras superfamily.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Alternative Splicing / physiology*
  • Amino Acid Sequence
  • Apoptosis / physiology*
  • Base Sequence
  • Breast Neoplasms
  • Cell Division / physiology*
  • Cell Nucleus / enzymology
  • Cytoplasm / enzymology
  • Female
  • GTP Phosphohydrolases / chemistry
  • GTP Phosphohydrolases / genetics
  • GTP Phosphohydrolases / metabolism
  • Guanosine Diphosphate / metabolism
  • Guanosine Triphosphate / metabolism
  • HeLa Cells
  • Humans
  • Isomerism
  • MAP Kinase Signaling System / physiology
  • Molecular Sequence Data
  • Protein Structure, Tertiary
  • RNA, Small Interfering
  • ras Proteins / chemistry
  • ras Proteins / genetics*
  • ras Proteins / metabolism*

Substances

  • RNA, Small Interfering
  • Guanosine Diphosphate
  • Guanosine Triphosphate
  • GTP Phosphohydrolases
  • RABL6 protein, human
  • ras Proteins

Associated data

  • GENBANK/GQ169126
  • GENBANK/GQ169127