Psychrobacter fulvigenes sp. nov., isolated from a marine crustacean from the Sea of Japan

Int J Syst Evol Microbiol. 2009 Jun;59(Pt 6):1480-6. doi: 10.1099/ijs.0.007195-0.

Abstract

Two novel Psychrobacter-like bacteria, strains KC 40(T) and KC 65, were isolated from a marine crustacean specimen collected from the Sea of Japan, and were characterized by using a polyphasic approach. Strains were selected on the basis of their ability to produce black-brown diffusible pigments on commonly used organic media, which appears to be a unique characteristic of recognized members of the genus Psychrobacter. Phylogenetic analyses based on both 16S rRNA and gyrB gene sequences showed that the novel isolates formed a separate cluster within the genus Psychrobacter. Strains KC 40(T) and KC 65 shared highest levels of 16S rRNA gene sequence similarity with Psychrobacter urativorans DSM 14009(T) (98.0 %), Psychrobacter pulmonis CCUG 46240(T) (97.9 %), Psychrobacter cibarius JG-219(T) (97.9 %), Psychrobacter faecalis Iso-46(T) (97.8 %), Psychrobacter aquimaris SW-210(T) (97.6 %), Psychrobacter namhaensis SW-242(T) (97.6 %) and Psychrobacter nivimaris 88/2-7(T) (97.6 %). DNA-DNA hybridization experiments revealed 84 % DNA-DNA relatedness between strains KC 40(T) and KC 65 but much lower levels of relatedness (7-35 %) between the novel strains and the type strains of recognized Psychrobacter species, confirming their assignment to a single novel species of the genus Psychrobacter. The two novel strains could be distinguished from recognized species of the genus Psychrobacter based on a combination of physiological and biochemical characteristics. On the basis of phenotypic and molecular properties, strains KC 40(T) and KC 65 are considered to represent a novel species of the genus Psychrobacter, for which the name Psychrobacter fulvigenes sp. nov. is proposed. The type strain is KC 40(T) (=KMM 3954(T)=NRIC 0746(T)=JCM 15525(T)).

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Bacterial Typing Techniques
  • Base Composition
  • Crustacea / microbiology*
  • DNA Gyrase / genetics
  • DNA, Bacterial / analysis
  • DNA, Ribosomal / analysis
  • Japan
  • Molecular Sequence Data
  • Nucleic Acid Hybridization
  • Oceans and Seas
  • Phenotype
  • Phylogeny
  • Polymerase Chain Reaction / methods
  • Psychrobacter / classification*
  • Psychrobacter / genetics
  • Psychrobacter / isolation & purification*
  • Psychrobacter / physiology
  • RNA, Ribosomal, 16S / genetics
  • Seawater
  • Sequence Analysis, DNA
  • Species Specificity

Substances

  • DNA, Bacterial
  • DNA, Ribosomal
  • RNA, Ribosomal, 16S
  • DNA Gyrase

Associated data

  • GENBANK/AB438958
  • GENBANK/AB438959
  • GENBANK/AB438960
  • GENBANK/AB438961