An indirect method to measure trimerization constants using surface plasmon resonance

Anal Biochem. 2009 Oct 1;393(1):126-8. doi: 10.1016/j.ab.2009.06.003. Epub 2009 Jun 10.

Abstract

The ability of surface plasmon resonance to precisely measure kinetic binding constants was exploited here to indirectly evaluate the thermodynamic dissociation trimerization constant (K(d)) of a designed chimeric protein, IZN-23, derived from an isoleucine zipper and a portion of the N-terminal helix residues of HIV-1 gp41. The method uses two monoclonal antibodies (mAbs) that display different off-rates when binding the monomeric or trimeric IZN-23. A detailed description of the data analysis strategy employed to unravel the K(d) trimerization constant from the observed off-rate kinetic values is presented, and the potential exploitation of this technique in different fields is highlighted.

MeSH terms

  • HIV Envelope Protein gp41 / analysis*
  • HIV Envelope Protein gp41 / metabolism
  • HIV-1 / metabolism
  • Leucine Zippers
  • Protein Multimerization*
  • Recombinant Proteins / analysis
  • Recombinant Proteins / metabolism
  • Surface Plasmon Resonance / methods*

Substances

  • HIV Envelope Protein gp41
  • Recombinant Proteins