Interpretation of very low resolution X-ray electron-density maps using core objects

Acta Crystallogr D Biol Crystallogr. 2009 Jul;65(Pt 7):690-6. doi: 10.1107/S090744490901991X. Epub 2009 Jun 20.

Abstract

A novel approach to obtaining structural information from macromolecular X-ray data extending to resolutions as low as 20 A is presented. Following a simple map-segmentation procedure, the approximate shapes of the domains forming the structure are identified. A pattern-recognition comparative analysis of these shapes and those derived from the structures of domains from the PDB results in candidate structural models that can be used for a fit into the density map. It is shown that the placed candidate models can be employed for subsequent phase extension to higher resolution.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacteria / chemistry
  • Bacterial Proteins / chemistry
  • Bacterial Proteins / metabolism
  • Crystallography, X-Ray / methods*
  • Databases, Protein
  • Electrons
  • Models, Molecular
  • Mutagens / chemistry
  • Protein Multimerization
  • Protein Structure, Quaternary
  • Protein Structure, Tertiary

Substances

  • Bacterial Proteins
  • Mutagens