Characterization of gadolinium complexes for SAD phasing in macromolecular crystallography: application to CbpF

Acta Crystallogr D Biol Crystallogr. 2009 Aug;65(Pt 8):823-31. doi: 10.1107/S0907444909017958. Epub 2009 Jul 17.

Abstract

Seven Gd complexes were used in the preparation of heavy-atom derivatives for solving the structure of choline-binding protein F (CbpF), a 36 kDa surface protein from Streptococcus pneumoniae, by the SAD method. CbpF was used as a model system to analyse the phasing capability of each of the derivatives. Three different aspects have been systematically characterized: the efficacy of cocrystallization versus soaking in the binding of the different Gd complexes, their mode of interaction and a comparative study of SAD phasing using synchrotron radiation and using a rotating-anode generator. This study reveals the striking potential of these complexes for SAD phasing using a laboratory source and further reinforces their relevance for high-throughput macromolecular crystallography.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacterial Proteins / chemistry*
  • Bacterial Proteins / metabolism
  • Carrier Proteins / chemistry*
  • Carrier Proteins / metabolism
  • Choline / metabolism
  • Crystallization
  • Gadolinium / chemistry*
  • Gadolinium / metabolism
  • Macromolecular Substances / chemistry*
  • Macromolecular Substances / metabolism
  • Protein Binding
  • Protein Conformation
  • Streptococcus pneumoniae*
  • Sulfur / chemistry
  • Sulfur / metabolism
  • Synchrotrons
  • X-Ray Diffraction

Substances

  • Bacterial Proteins
  • Carrier Proteins
  • Macromolecular Substances
  • Sulfur
  • Gadolinium
  • Choline