Oligomerization route to Py-Im polyamide macrocycles

Org Lett. 2009 Aug 20;11(16):3590-3. doi: 10.1021/ol901311m.

Abstract

Cyclic eight-ring pyrrole-imidazole polyamides are sequence-specific DNA-binding small molecules that are cell permeable and can regulate endogenous gene expression. Syntheses of cyclic polyamides have been achieved by solid-phase and solution-phase methods. A rapid solution-phase oligomerization approach to eight-ring symmetrical cyclic polyamides yields 12- and 16-membered macrocycles as well. A preference for DNA binding by the 8- and 16-membered oligomers was observed over the 12-ring macrocycle, which we attributed to a conformational constraint not present in the smaller and larger systems.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Base Sequence
  • DNA / chemistry
  • Imidazoles / chemistry*
  • Molecular Structure
  • Nylons / chemical synthesis*
  • Nylons / chemistry
  • Pyrroles / chemistry*

Substances

  • Imidazoles
  • Nylons
  • Pyrroles
  • DNA