iBioSim: a tool for the analysis and design of genetic circuits

Chris J Myers; Nathan Barker; Kevin Jones; Hiroyuki Kuwahara; Curtis Madsen; Nam-Phuong D Nguyen

doi:10.1093/bioinformatics/btp457

iBioSim: a tool for the analysis and design of genetic circuits

Bioinformatics. 2009 Nov 1;25(21):2848-9. doi: 10.1093/bioinformatics/btp457. Epub 2009 Jul 23.

Authors

Chris J Myers¹, Nathan Barker, Kevin Jones, Hiroyuki Kuwahara, Curtis Madsen, Nam-Phuong D Nguyen

Affiliation

¹ Department of Electrical and Computer Engineering, University of Utah, Salt Lake City, Utah, USA. [email protected]

PMID: 19628507
DOI: 10.1093/bioinformatics/btp457

Abstract

Summary: iBioSim is a tool that supports learning of genetic circuit models, efficient abstraction-based analysis of these models and the design of synthetic genetic circuits. iBioSim includes project management features and a graphical user interface that facilitate the development and maintenance of genetic circuit models as well as both experimental and simulation data records.

Availability: iBioSim is available for download for Windows, Linux, and MacOS at http://www.async.ece.utah.edu/iBioSim/

Contact: [email protected].

Publication types

Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

Computational Biology / methods*
Computer Graphics
Gene Expression Profiling / methods
Models, Genetic
Software*
User-Computer Interface