Sequential 1H-NMR assignments and secondary structure of the sea anemone polypeptide anthopleurin-A

Eur J Biochem. 1990 Feb 14;187(3):555-63. doi: 10.1111/j.1432-1033.1990.tb15337.x.

Abstract

The sequence-specific assignment of resonances in the 500-MHz 1H-NMR spectrum of a cardioactive sea anemone polypeptide, anthopleurin-A, is described. The assignment procedure involved analysis of two-dimensional phase-sensitive multiple-quantum-filtered, double-quantum, homonuclear Hartmann-Hahn and nuclear Overhauser effect spectra. Using sequential information, specific assignments have been made for resonances arising from all 49 amino acid residues. Resonances arising from a number of residues in a minor conformer present in solution are also assigned. These results greatly extend previous resonance assignments made from spectra acquired at 300 MHz [Gooley, P. R. and Norton, R. S. (1985) Eur. J. Biochem. 153, 529-539] and provide the basis for a more accurate definition of the conformation of anthopleurin-A in aqueous solution. The secondary structure includes a four-stranded antiparallel beta-sheet encompassing residues 2-4, 21-23, 34-36 and 45-49, and possibly a beta-bulge located at Ser-19 and Gly-20. A type II beta-turn is formed by residues 30-33. These structural elements also occur within other related sea anemone polypeptides, but the conformation of the small loop region containing Pro-41 appears to be unique to anthopleurin-A.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Amino Acids / analysis
  • Animals
  • Cnidaria / metabolism*
  • Hydrogen Bonding
  • Intercellular Signaling Peptides and Proteins
  • Magnetic Resonance Spectroscopy / methods
  • Molecular Sequence Data
  • Molecular Structure
  • Peptides / isolation & purification*
  • Protein Conformation
  • Sea Anemones / metabolism*
  • Solutions

Substances

  • Amino Acids
  • Intercellular Signaling Peptides and Proteins
  • Peptides
  • Solutions
  • anthopleurin-A