[Protein structure prediction from analogy. I. New database of spatially similar and dissimilar structures of protein domains for testing and optimization of prediction methods]

Mol Biol (Mosk). 2009 Jul-Aug;43(4):722-32.
[Article in Russian]

Abstract

The paper describes creation and analysis of a database 3Dfold_test. This database consists of a large set of pairs of spatially-similar structures of protein domains and of an accompanying, much larger control set of "decoys", i.e., spatially-dissimilar protein structures, having approximately the same size and compactness as each member of a pair of spatially-similar proteins. The database 3Dfold_test can be found at the site http://phys.protres.ru/resources/prediction analogy/3Dfold/.

Publication types

  • English Abstract
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Databases, Protein*
  • Predictive Value of Tests
  • Protein Folding*
  • Protein Structure, Tertiary / physiology
  • Proteins / classification
  • Proteins / genetics*
  • Software*
  • Structural Homology, Protein

Substances

  • Proteins