Direct multiplex reverse transcription-nested PCR detection of influenza viruses without RNA purification

J Microbiol Biotechnol. 2009 Nov;19(11):1470-4. doi: 10.4014/jmb.0905.5012.

Abstract

This paper describes the development a of direct multiplex reverse transcription-nested polymerase chain reaction (PCR) method, devised for simultaneous detection and typing of influenza viruses. This method combines the direct reverse transcription reaction without RNA purification with the enhancement of sensitivity and specificity of nested PCR. The method successfully detected three major human influenza viruses: influenza virus A subtype 1 (H1N1) and subtype 3 (H3N2), and influenza B virus (B). The minimum number of virus particles (pfu/ml) necessary for detection in spiked saliva samples was 200 (H1N1), 140 (H3N2), and 4.5 (B). The method's sensitivity and simplicity will be convenient for use in clinical laboratories for the detection and subtyping of influenza and possibly other RNA viruses.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • DNA, Viral / genetics
  • DNA, Viral / isolation & purification
  • Hot Temperature
  • Humans
  • Influenza A Virus, H1N1 Subtype* / genetics
  • Influenza A Virus, H1N1 Subtype* / isolation & purification
  • Influenza A Virus, H3N2 Subtype* / genetics
  • Influenza A Virus, H3N2 Subtype* / isolation & purification
  • Influenza B virus* / genetics
  • Influenza B virus* / isolation & purification
  • Influenza, Human / diagnosis*
  • Influenza, Human / virology
  • Molecular Diagnostic Techniques / methods
  • RNA, Viral* / genetics
  • RNA, Viral* / isolation & purification
  • Reverse Transcriptase Polymerase Chain Reaction / methods*
  • Saliva / virology
  • Sensitivity and Specificity

Substances

  • DNA, Viral
  • RNA, Viral