Direct culture-independent Strain typing of Burkholderia cepacia complex in sputum samples from patients with cystic fibrosis

J Clin Microbiol. 2010 May;48(5):1888-91. doi: 10.1128/JCM.02359-09. Epub 2010 Feb 24.

Abstract

We examined if multilocus sequence typing (MLST), a method for genotyping and species identification of Burkholderia cepacia complex bacteria, could be applied directly to cystic fibrosis sputum. The redesigned nested-PCR MLST format was successfully used to accurately identify strains in 23 sputum samples, of which 8 were culture negative.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacterial Typing Techniques / methods*
  • Burkholderia Infections / microbiology*
  • Burkholderia cepacia complex / classification*
  • Burkholderia cepacia complex / genetics
  • Cluster Analysis
  • Cystic Fibrosis / complications*
  • DNA, Bacterial / chemistry
  • DNA, Bacterial / genetics
  • Genotype
  • Humans
  • Pneumonia, Bacterial / microbiology*
  • Sequence Analysis, DNA
  • Sputum / microbiology*

Substances

  • DNA, Bacterial