Limited sequence variation in human T-lymphotropic virus type 1 isolates from North American and African patients

Virology. 1991 May;182(1):111-23. doi: 10.1016/0042-6822(91)90654-t.

Abstract

Nucleotide sequences were determined from the env genes of three HTLV-I clones derived from two North American patients and one African patient with adult T-cell leukemia/lymphoma (ATLL). In addition, sequences from the pX region, between env and the 3'LTR, were determined from one of these isolates. These data were compared to sequences derived from HTLV-I isolates of two Japanese ATLL patients, a Japanese patient with HTLV-I-associated myelopathy or tropical spastic paraparesis (HAM/TSP) and a Caribbean ATLL patient. Nucleotide sequence variation was found to be less than 6% in coding and noncoding regions. Predicted amino acid sequences varied between 0.6 and 1.8% in the envelope, 0-3.7% in rex, 0.8-2.5% in the tax gene product, and 3-14.0% in the pX-I open reading frame. Comparisons of the predicted amino acid sequences of the surface envelope protein (SU-gp46) suggest that the variation between isolates of different geographical origins is greater than that between isolates obtained from the same region of the world.

Publication types

  • Comparative Study
  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Africa / ethnology
  • Amino Acid Sequence
  • Base Sequence
  • Gene Products, env / genetics*
  • Gene Products, tax / genetics
  • Genes, Viral*
  • Human T-lymphotropic virus 1 / genetics*
  • Leukemia, T-Cell / microbiology*
  • Molecular Sequence Data
  • North America / ethnology
  • Polymorphism, Genetic
  • Viral Structural Proteins / genetics*

Substances

  • Gene Products, env
  • Gene Products, tax
  • Viral Structural Proteins

Associated data

  • GENBANK/M59049
  • GENBANK/M59050
  • GENBANK/M64461
  • GENBANK/M64464
  • GENBANK/M64467
  • GENBANK/M64469
  • GENBANK/M64470
  • GENBANK/M67490
  • GENBANK/M67514
  • GENBANK/M69044