Discovery of 23 natural tubulysins from Angiococcus disciformis An d48 and Cystobacter SBCb004

Chem Biol. 2010 Mar 26;17(3):296-309. doi: 10.1016/j.chembiol.2010.01.016.

Abstract

The tubulysins are a family of complex peptides with promising cytotoxic activity against multi-drug-resistant tumors. To date, ten tubulysins have been described from the myxobacterial strains Angiococcus disciformis An d48 and Archangium gephyra Ar 315. We report here a third producing strain, Cystobacter sp. SBCb004. Comparison of the tubulysin biosynthetic gene clusters in SBCb004 and An d48 reveals a conserved architecture, allowing the assignment of cluster boundaries. A SBCb004 strain containing a mutant in the putative cyclodeaminase gene tubZ accumulates pretubulysin A, the proposed first enzyme-free intermediate in the pathway, whose structure we confirm by NMR. We further show, using a combination of feeding studies and structure elucidation by NMR and high-resolution tandem mass spectrometry, that SBCb004 and An d48 together biosynthesize 22 additional tubulysin derivatives. These data reveal the inherently diversity-oriented nature of the tubulysin biosynthetic pathway.

Publication types

  • Comparative Study
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Base Sequence
  • DNA
  • DNA, Bacterial / chemistry
  • DNA, Bacterial / genetics
  • Genes, Bacterial
  • Humans
  • Molecular Sequence Data
  • Multigene Family
  • Mutagenesis, Insertional
  • Myxococcales / chemistry*
  • Myxococcales / genetics
  • Nuclear Magnetic Resonance, Biomolecular
  • Oligopeptides / genetics
  • Oligopeptides / isolation & purification*
  • Oligopeptides / pharmacology
  • Pipecolic Acids / chemistry
  • Polymerase Chain Reaction
  • Spectrometry, Mass, Electrospray Ionization
  • Stereoisomerism

Substances

  • DNA, Bacterial
  • Oligopeptides
  • Pipecolic Acids
  • DNA
  • pipecolic acid

Associated data

  • GENBANK/GU002154