An ATP-independent strategy for amide bond formation in antibiotic biosynthesis

Nat Chem Biol. 2010 Aug;6(8):581-6. doi: 10.1038/nchembio.393. Epub 2010 Jun 20.

Abstract

A-503083 B, a capuramycin-type antibiotic, contains an L-aminocaprolactam and an unsaturated hexuronic acid that are linked via an amide bond. A putative class C beta-lactamase (CapW) was identified within the biosynthetic gene cluster that-in contrast to the expected beta-lactamase activity-catalyzed an amide-ester exchange reaction to eliminate the L-aminocaprolactam with concomitant generation of a small but significant amount of the glyceryl ester derivative of A-503083 B, suggesting a potential role for an ester intermediate in the biosynthesis of capuramycins. A carboxyl methyltransferase, CapS, was subsequently demonstrated to function as an S-adenosylmethionine-dependent carboxyl methyltransferase to form the methyl ester derivative of A-503083 B. In the presence of free L-aminocaprolactam, CapW efficiently converts the methyl ester to A-503083 B, thereby generating a new amide bond. This ATP-independent amide bond formation using methyl esterification followed by an ester-amide exchange reaction represents an alternative to known strategies of amide bond formation.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adenosine Triphosphate / physiology*
  • Amides / metabolism*
  • Anti-Bacterial Agents / biosynthesis*
  • Azepines
  • Carboxylic Acids / chemistry
  • Catalysis
  • Cloning, Molecular
  • DNA Mutational Analysis
  • DNA, Bacterial / genetics
  • Esters / metabolism
  • Gene Library
  • Hydrolysis
  • Kinetics
  • Lysine / metabolism
  • Multigene Family
  • Protein O-Methyltransferase / metabolism
  • Streptomyces / genetics*
  • Streptomyces / metabolism
  • Uridine / analogs & derivatives*
  • Uridine / biosynthesis
  • Uridine / genetics
  • beta-Lactamases / biosynthesis
  • beta-Lactamases / genetics

Substances

  • A 503083 A
  • Amides
  • Anti-Bacterial Agents
  • Azepines
  • Carboxylic Acids
  • DNA, Bacterial
  • Esters
  • Adenosine Triphosphate
  • Protein O-Methyltransferase
  • beta-Lactamases
  • Lysine
  • Uridine

Associated data

  • PubChem-Substance/93616625
  • PubChem-Substance/93616626
  • PubChem-Substance/93616627
  • PubChem-Substance/93616628
  • PubChem-Substance/93616629
  • PubChem-Substance/93616630