CG base pair recognition within DNA triple helices by modified N-methylpyrrolo-dC nucleosides

Org Biomol Chem. 2010 Nov 21;8(22):5087-96. doi: 10.1039/c0ob00119h. Epub 2010 Sep 6.

Abstract

3-Aminophenyl-modified analogues of the bicyclic nucleoside N-methyl-3H-pyrrolo[2,3-d]pyrimidin-2(7H)-one were synthesised and incorporated directly into triplex-forming oligonucleotides in order to utilise their extended hydrogen bonding motif for recognition of the CG base pair. All analogues demonstrated strong binding affinity and very good selectivity for CG from pH 6.2 to 7.0; a marked improvement on previous modifications.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Base Pairing / genetics*
  • DNA / chemistry*
  • Fluorescence
  • Hydrogen-Ion Concentration / radiation effects
  • Models, Molecular
  • Nucleic Acid Conformation* / radiation effects
  • Nucleic Acid Denaturation / radiation effects
  • Nucleosides / chemistry*
  • Pyrroles / chemistry*
  • Ultraviolet Rays

Substances

  • Nucleosides
  • Pyrroles
  • DNA