Isolation, fine mapping and expression profiling of a lesion mimic genotype, spl(NF4050-8) that confers blast resistance in rice

Theor Appl Genet. 2011 Mar;122(4):831-54. doi: 10.1007/s00122-010-1490-7. Epub 2010 Dec 4.

Abstract

We evaluated a large collection of Tos17 mutant panel lines for their reaction to three different races of Magnaporthe oryzae and identified a lesion mimic mutant, NF4050-8, that showed lesions similar to naturally occurring spl5 mutant and enhanced resistance to all the three blast races tested. Nested modified-AFLP using Tos17-specific primers and southern hybridization experiments of segregating individuals indicated that the lesion mimic phenotype in NF4050-8 is most likely due to a nucleotide change acquired during the culturing process and not due to Tos17 insertion per se. Inheritance and genetic analyses in two japonica × indica populations identified an overlapping genomic region of 13 cM on short arm of chromosome 7 that was linked with the lesion mimic phenotype. High-resolution genetic mapping using 950 F(3) and 3,821 F(4) plants of NF4050-8 × CO39 delimited a 35 kb region flanked by NBARC1 (5.262 Mb) and RM8262 (5.297 Mb), which contained 6 ORFs; 3 of them were 'resistance gene related' with typical NBS-LRR signatures. One of them harbored a NB-ARC domain, which had been previously demonstrated to be associated with cell death in animals. Microarray analysis of NF4050-8 revealed significant up-regulation of numerous defense/pathogenesis-related genes and down-regulation of heme peroxidase genes. Real-time PCR analysis of WRKY45 and PR1b genes suggested possible constitutive activation of a defense signaling pathway downstream of salicylic acid but independent of NH1 in these mutant lines of rice.

MeSH terms

  • Alleles
  • Chromosome Segregation / genetics
  • Chromosomes, Plant / genetics
  • Crosses, Genetic
  • Gene Expression Profiling*
  • Gene Expression Regulation, Plant
  • Gene Library
  • Genes, Plant / genetics*
  • Genetic Linkage
  • Genetic Loci / genetics
  • Genotype
  • Immunity, Innate / genetics*
  • Inheritance Patterns / genetics
  • Japan
  • Magnaporthe / physiology*
  • Molecular Sequence Annotation
  • Mutagenesis, Insertional / genetics
  • Mutation / genetics
  • Nucleotides / genetics
  • Oligonucleotide Array Sequence Analysis
  • Oryza / genetics*
  • Oryza / immunology
  • Oryza / microbiology
  • Physical Chromosome Mapping*
  • Plant Diseases / genetics
  • Plant Diseases / immunology*
  • Plant Diseases / microbiology
  • Regeneration / genetics
  • Tissue Culture Techniques

Substances

  • Nucleotides