Detection of HIV-1 DNA in crude cell lysates of peripheral blood mononuclear cells by the polymerase chain reaction and nonradioactive oligonucleotide probes

J Acquir Immune Defic Syndr (1988). 1990;3(11):1059-64.

Abstract

The aim of this study was to detect HIV-1 proviral DNA in lysates of peripheral blood mononuclear cells (PBMCs) by the polymerase chain reaction (PCR) and hybridization with a nonradioactive probe. PBMCs were lysed in 1% Triton X-100. PCR was then carried out using primers complementary to a conserved region of the HIV-1 pol gene. Bracket and nested amplification protocols were used. Products were identified by dot-blot hybridization or agarose gel electrophoresis and Southern hybridization, using an alkaline phosphatase-linked oligonucleotide probe specific for amplified sequences. Colorimetric and chemiluminescent substrates were used. HIV-1 DNA was detected in PBMCs of 57/59 HIV-1-seropositive individuals, 8 of which were positive only following the use of nested primers. Of 12 seropositive samples that were negative by other HIV-1 diagnostic tests (PBMC coculture and serum p24 antigen detection), 11 were positive by PCR. PCR using PBMC lysates is a very sensitive method of detecting HIV-1 proviral sequences. The use of nested primers appears to increase the sensitivity of the procedure.

Publication types

  • Comparative Study
  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Base Sequence
  • Blotting, Southern
  • DNA, Viral / analysis*
  • Electrophoresis, Agar Gel
  • Gene Products, gag / blood
  • HIV Core Protein p24
  • HIV Seropositivity / microbiology
  • HIV-1 / genetics
  • HIV-1 / isolation & purification*
  • Humans
  • Immunoblotting
  • Leukocytes, Mononuclear / microbiology*
  • Molecular Sequence Data
  • Oligonucleotide Probes*
  • Polymerase Chain Reaction* / methods
  • Proviruses / genetics
  • Proviruses / isolation & purification*
  • Viral Core Proteins / blood

Substances

  • DNA, Viral
  • Gene Products, gag
  • HIV Core Protein p24
  • Oligonucleotide Probes
  • Viral Core Proteins