Optimal HRF and smoothing parameters for fMRI time series within an autoregressive modeling framework

J Integr Neurosci. 2010 Dec;9(4):429-52. doi: 10.1142/s0219635210002494.

Abstract

The analysis of time series obtained by functional magnetic resonance imaging (fMRI) may be approached by fitting predictive parametric models, such as nearest-neighbor autoregressive models with exogeneous input (NNARX). As a part of the modeling procedure, it is possible to apply instantaneous linear transformations to the data. Spatial smoothing, a common preprocessing step, may be interpreted as such a transformation. The autoregressive parameters may be constrained, such that they provide a response behavior that corresponds to the canonical haemodynamic response function (HRF). We present an algorithm for estimating the parameters of the linear transformations and of the HRF within a rigorous maximum-likelihood framework. Using this approach, an optimal amount of both the spatial smoothing and the HRF can be estimated simultaneously for a given fMRI data set. An example from a motor-task experiment is discussed. It is found that, for this data set, weak, but non-zero, spatial smoothing is optimal. Furthermore, it is demonstrated that activated regions can be estimated within the maximum-likelihood framework.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Algorithms
  • Brain / anatomy & histology
  • Brain / physiology*
  • Brain Mapping / methods*
  • Cerebrovascular Circulation / physiology
  • Computer Simulation / standards*
  • Hemodynamics / physiology
  • Humans
  • Image Processing, Computer-Assisted / methods*
  • Linear Models
  • Magnetic Resonance Imaging / methods*
  • Regression Analysis
  • Time Factors